The openings will remain in place
Keeping a window does not remove the need to connect the new siding work to its existing flashing. Ask what can actually be verified without removing the unit and what will remain concealed. A proposal can responsibly retain an opening while identifying an inspection limit; it should not describe an unobserved connection as confirmed. Decide in advance what finding would justify more access.
Notice next: Request an opening-by-opening schedule stating retained details, planned exposure and how unexpected conditions will be authorized.